{"description":"Kodoja\u306fk-mer\u30d7\u30ed\u30d5\u30a1\u30a4\u30ea\u30f3\u30b0\u3092\u4f7f\u7528\u3057\u3066RNA-seq\u307e\u305f\u306fsRNA-se\u306efastq/fasta\u751f\u30c7\u30fc\u30bf\u304b\u3089\u30a6\u30a4\u30eb\u30b9\u914d\u5217\u3092\u7279\u5b9a\u3059\u308b\u30c4\u30fc\u30eb\u3002 k-mer\u3092\u7528\u3044\u305f\u7cfb\u7d71\u5206\u985e\u30c4\u30fc\u30ebKraken\u3068\u304a\u3088\u3073\u30bf\u30f3\u30d1\u30af\u8cea\u30ec\u30d9\u30eb\u3067\u306e\u914d\u5217\u30de\u30c3\u30c1\u30f3\u30b0\u306eKaiju\u3092\u7d44\u307f\u5408\u308f\u305b\u3066\u3044\u308b\uff08Burrows-Wheeler\u5909\u63db\u3057\u3066\u3044\u308b\uff09\u3002 wiki https://github.com/abaizan/kodoja/wiki/Kodoja-Manual \u30a4\u30f3\u30b9\u30c8\u30fc\u30eb mac os10.14\u306eminiconda3-4.3.30\u74b0\u5883\u3067\u30c6\u30b9\u30c8\u3057\u305f\u3002 \u4f9d\u5b58 You can use Python 2.7 or Python 3\u2026","published":"2019-01-13 07:30:00","type":"rich","blog_url":"https://kazumaxneo.hatenablog.com/","height":"190","url":"https://kazumaxneo.hatenablog.com/entry/2019/01/13/073000","title":"\u690d\u7269RNA seq\u30b7\u30fc\u30b1\u30f3\u30b7\u30f3\u30b0\u30c7\u30fc\u30bf\u304b\u3089virus\u30ea\u30fc\u30c9\u3092\u691c\u51fa\u3059\u308b kodoja","categories":["RNA seq","plant","virus","taxonomic assignment","k-mer"],"author_name":"kazumaxneo","provider_name":"Hatena Blog","provider_url":"https://hatena.blog","blog_title":"mac\u3067\u30a4\u30f3\u30d5\u30a9\u30de\u30c6\u30a3\u30af\u30b9","author_url":"https://blog.hatena.ne.jp/kazumaxneo/","width":"100%","html":"<iframe src=\"https://hatenablog-parts.com/embed?url=https%3A%2F%2Fkazumaxneo.hatenablog.com%2Fentry%2F2019%2F01%2F13%2F073000\" title=\"\u690d\u7269RNA seq\u30b7\u30fc\u30b1\u30f3\u30b7\u30f3\u30b0\u30c7\u30fc\u30bf\u304b\u3089virus\u30ea\u30fc\u30c9\u3092\u691c\u51fa\u3059\u308b kodoja - mac\u3067\u30a4\u30f3\u30d5\u30a9\u30de\u30c6\u30a3\u30af\u30b9\" class=\"embed-card embed-blogcard\" scrolling=\"no\" frameborder=\"0\" style=\"display: block; width: 100%; height: 190px; max-width: 500px; margin: 10px 0px;\"></iframe>","image_url":null,"version":"1.0"}