{"url":"https://kazumaxneo.hatenablog.com/entry/2020/08/27/223041","provider_url":"https://hatena.blog","type":"rich","provider_name":"Hatena Blog","categories":["variant calling on RNAseq","human genome","RNA seq","automated pipeline","somatic mutation","docker"],"html":"<iframe src=\"https://hatenablog-parts.com/embed?url=https%3A%2F%2Fkazumaxneo.hatenablog.com%2Fentry%2F2020%2F08%2F27%2F223041\" title=\"GATK\u30d9\u30b9\u30c8\u30d7\u30e9\u30af\u30c6\u30a3\u30b9\u306b\u57fa\u3065\u3044\u305f\u3001RNA seq\u306e\u30d0\u30ea\u30a2\u30f3\u30c8\u30b3\u30fc\u30eb\u3092\u884c\u3046nextflow\u30d1\u30a4\u30d7\u30e9\u30a4\u30f3 CalliNGS-NF - mac\u3067\u30a4\u30f3\u30d5\u30a9\u30de\u30c6\u30a3\u30af\u30b9\" class=\"embed-card embed-blogcard\" scrolling=\"no\" frameborder=\"0\" style=\"display: block; width: 100%; height: 190px; max-width: 500px; margin: 10px 0px;\"></iframe>","width":"100%","version":"1.0","blog_title":"mac\u3067\u30a4\u30f3\u30d5\u30a9\u30de\u30c6\u30a3\u30af\u30b9","title":"GATK\u30d9\u30b9\u30c8\u30d7\u30e9\u30af\u30c6\u30a3\u30b9\u306b\u57fa\u3065\u3044\u305f\u3001RNA seq\u306e\u30d0\u30ea\u30a2\u30f3\u30c8\u30b3\u30fc\u30eb\u3092\u884c\u3046nextflow\u30d1\u30a4\u30d7\u30e9\u30a4\u30f3 CalliNGS-NF","description":"\u767a\u73fe\u60c5\u5831\u306b\u52a0\u3048\u3066\u3001RNA\u30b7\u30fc\u30af\u30a8\u30f3\u30b7\u30f3\u30b0\uff08RNA-seq\uff09\u30c7\u30fc\u30bf\u306f\u3001\u5206\u6790\u5bfe\u8c61\u306e\u751f\u7269\u306e\u907a\u4f1d\u5b50\u306b\u5b58\u5728\u3059\u308b\u4f53\u7d30\u80de\u5909\u7570\u3092\u53d6\u5f97\u3059\u308b\u305f\u3081\u306b\u4f7f\u7528\u3059\u308b\u3053\u3068\u304c\u3067\u304d\u308b\u3002CalliNGS-NF\u30d1\u30a4\u30d7\u30e9\u30a4\u30f3\u306f\u3001RNAseq\u30c7\u30fc\u30bf\u3092\u51e6\u7406\u3057\u3066\u3001\u30b9\u30e2\u30fc\u30eb\u30d0\u30ea\u30a2\u30f3\u30c8\uff08SNV\uff09\u3001SNP\u3001\u304a\u3088\u3073small INDELs\uff08\u633f\u5165\u3001\u6b20\u5931\uff09\u3092\u53d6\u5f97\u3059\u308b\u3002\u3053\u306e\u30d1\u30a4\u30d7\u30e9\u30a4\u30f3\u306f\u3001RNAseq\u4e0a\u3067\u306e\u30d0\u30ea\u30a2\u30f3\u30c8\u30b3\u30fc\u30eb\u306e\u305f\u3081\u306eGATK\u30d9\u30b9\u30c8\u30d7\u30e9\u30af\u30c6\u30a3\u30b9\u3092\u5b9f\u88c5\u3057\u305f\u3082\u306e\u3067\u3001\u89e3\u6790\u306e\u4e3b\u8981\u306a\u30b9\u30c6\u30c3\u30d7\u3092\u3059\u3079\u3066\u542b\u3093\u3067\u3044\u308b\u3002GATK\u306e\u30d9\u30b9\u30c8\u30d7\u30e9\u30af\u30c6\u30a3\u30b9\u306b\u52a0\u3048\u3066\u3001\u30d1\u30a4\u30d7\u30e9\u30a4\u30f3\u306b\u306f\u3001\u5f97\u3089\u308c\u305fSNP\u3068\u65e2\u77e5\u306e\u30d0\u30ea\u30a2\u30f3\u30c8\u3092\u6bd4\u8f03\u3059\u308b\u30b9\u30c6\u30c3\u30d7\u3068\u3001\u30aa\u30fc\u30d0\u30fc\u30e9\u30c3\u30d7\u3057\u305fSNP\u306e\u30a2\u30ec\u30eb\u7279\u2026","published":"2020-08-27 22:30:41","author_name":"kazumaxneo","image_url":"https://cdn-ak.f.st-hatena.com/images/fotolife/k/kazumaxneo/20200827/20200827222338.png","blog_url":"https://kazumaxneo.hatenablog.com/","author_url":"https://blog.hatena.ne.jp/kazumaxneo/","height":"190"}